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Avatar for Prof. Dr. Johannes Köster from gravatar.com

教授 Dr. 约翰内斯·科斯特

用户名    johanneskoester

40个项目

snakemake-interface-executor-plugins

Last released

This package provides a stable interface for interactions between Snakemake and its executor plugins.

snakemake-interface-report-plugins

Last released

The interface for Snakemake report plugins.

snakemake-interface-common

Last released

Common functions and classes for Snakemake and its plugins

snakemake-executor-plugin-slurm

Last released

A Snakemake executor plugin for submitting jobs to a SLURM cluster.

snakemake

Last released

Workflow management system to create reproducible and scalable data analyses

snakemake-storage-plugin-xrootd

Last released

A Snakemake storage plugin for xrootd storage

snakemake-executor-plugin-kubernetes

Last released

A snakemake executor plugin for submission of jobs to Kubernetes

snakemake-executor-plugin-drmaa

Last released

A snakemake executor plugin for submission of jobs via DRMAA.

snakemake-storage-plugin-gcs

Last released

A Snakemake storage plugin for Google Cloud Storage

snakemake-storage-plugin-fs

Last released

A Snakemake storage plugin that reads and writes from a locally mounted filesystem using rsync

snakemake-interface-storage-plugins

Last released

This package provides a stable interface for interactions between Snakemake and its storage plugins.

snakemake-executor-plugin-googlebatch

Last released

None

snakemake-storage-plugin-s3

Last released

A Snakemake storage plugin for S3 API storage (AWS S3, MinIO, etc.)

snakemake-storage-plugin-azure

Last released

A Snakemake storage plugin to read and write from Azure Blob Storage

snakemake-executor-plugin-azure-batch

Last released

A Snakemake executor plugin for submitting jobs to Microsoft Azure Batch.

snakemake-storage-plugin-zenodo

Last released

A Snakemake storage plugin for reading from and writing to zenodo.org

conda-inject

Last released

Helper functions for injecting a conda environment into the current python environment (by modifying sys.path, without actually changing the current python environment).

snakefmt

Last released

The uncompromising Snakemake code formatter

snakedeploy

Last released

Deploy a snakemake pipeline from GitHub

snakemake-executor-plugin-slurm-jobstep

Last released

A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)

snakemake-executor-plugin-cluster-sync

Last released

A Snakemake executor plugin for cluster jobs that are executed synchronously.

snakemake-executor-plugin-tes

Last released

A Snakemake executor plugin for submitting jobs via GA4GH TES.

snakemake-executor-plugin-flux

Last released

A snakemake executor plugin for the Flux scheduler

snakemake-executor-plugin-cluster-generic

Last released

snakemake-storage-plugin-irods

Last released

A Snakemake plugin for handling input and output on iRODS

poetry-snakemake-plugin

Last released

A plugin for poetry that adds Snakemake-specific functionality.

ytml

Last released

A YAML based HTML templating engine

snakemake-storage-plugin-ftp

Last released

A Snakemake plugin for handling input and output via FTP

snakemake-executor-plugin-kueue

Last released

snakemake-storage-plugin-webdav

Last released

yte

Last released

A YAML template engine with Python expressions

snakemake-storage-plugin-http

Last released

Snakemake storage plugin for donwloading input files from HTTP(s).

snakemake-storage-plugin-sftp

Last released

A Snakemake storage plugin that handles files on an SFTP server.

snakemake-object

Last released

Language agnostic encoding of Snakemake job information as 'Snakemake objects' into Snakemake script preambles.

snakemake-wrapper-utils

Last released

A collection of utils for Snakemake wrappers.

calfreeslots

Last released

Command line utility to print free calendar slots in the coming days.

vispr

Last released

Interactive HTML5 visualization for CRISPR/Cas9 knockout screen experiments.

peanut

Last released

A massively parallel GPU read mapper using OpenCL.

alpaca-variant-caller

Last released

An algebraic parallel SNV caller using OpenCL

trminer

Last released

mine scientific publications for interesting sentences using patterns

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