ParProcCo

需要将YAML配置文件放置在包的祖父目录中，CONDA_PREFIX/etc或/etc

--- !PPCConfig
allowed_programs:
    rs_map: msmapper_utils
    blah1: whatever_package1
    blah2: whatever_package2
url: https://slurm.local:8443
extra_property_envs: # optional mapping of properties to pass to Slurm's JobDescMsg
    account: MY_ACCOUNT # env var that holds account
    comment: mega job
valid_top_directories: # optional mapping of top directories accessible from cluster nodes
                       # (used to check job scripts, log and working directories)
    - /cluster_home
    - /cluster_apps

可以在其他包的setup.py中添加名为ParProcCo.allowed_programs的入口点

setup(
...
    entry_points={PPC_ENTRY_POINT: ['blah1 = whatever_package1']},
)

它将在whatever_package1包中查找名为blah1_wrapper的模块。

测试

可以使用以下命令运行测试

$ pytest tests

要测试与Slurm的交互，请设置以下环境变量

SLURM_REST_URL  # URL for server and port where the REST endpoints are hosted
SLURM_PARTITION # Slurm cluster parition 
SLURM_JWT       # JSON web token for access to REST endpoints