A flexible and fast mixed model toolbox

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Project description

limix

Travis AppVeyor Documentation

Genomic analyses require flexible models that can be adapted to the needs of the user.

Limix is a flexible and efficient linear mixed model library with interfaces to Python. It includes methods for

  • Single-variant association and interaction testing
  • Variance decompostion analysis with linear mixed models
  • Association and interaction set tests
  • Different utils for statistical analysis, basic i/o, and plotting.

The documentation can be found at https://limix.readthedocs.io.

Install

Installation is easy and works on macOS, Linux, and Windows:

pip install limix

If you already have Limix but want to upgrade it to the latest version:

pip install limix --upgrade

Running tests

After installation, you can test it

python -c "import limix; limix.test()"

as long as you have pytest.

Authors

License

This project is licensed under the Apache License License.

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