Project description

kyutils

kyu's utils

behavior
- given the extracted DIO dat files from a SpikeGadgets rec file, plots the time course of the animal's decisions in the W-track task and indicates rewarded trials
- plots place field
nwb
- basic NWB conversion of ephys data
probe
- probeinterface.Probe objects for the 15um and 20um versions of the Livermore polymer probes
spikegadgets
- generates a trodesconf file based on a list of Livermore probe types; e.g. if implanting three Livermore probes (one 15um type and two 20um type) in alternating order, can pass the list [20, 15, 20] and will generate a trodesconf file with the contacts arranged geometrically
- generate a trodesconf file given the number of channels; good for reconfiguring
- parses the header of a SpikeGadgets rec file
spikesorting
- plots spike waveform in probe geometry
- computes standard metrisc for frank lab
- generates figurl

pip install kyutils

for the version that creates figurls, do pip install "kyutils[figurl]" and set up kachery-cloud.

Algorithm	Hash digest
SHA256	`33e69a2c9dd76f38d6a50641f1a8e778cc55af1ee12cb94ccb11c3c3908b9006`
MD5	`f1bd4674573ef48b1f0283c9ad038535`
BLAKE2b-256	`030767d0d1c7bf03e117cc243c1f7c50734f5f14f6f7f27a088423d399db69f6`

Algorithm	Hash digest
SHA256	`837aa3b844eb5f846a3fb2cd6ad34e95cd6170687e52be7fc9958bb7d5163c74`
MD5	`723ee8c3b2a45ac2a13ca99c69cb49de`
BLAKE2b-256	`a5644bf1fab91244739b12c43b6915e60dd30ecb824c1c66ab41b9719c1867ec`