安装

您可以通过运行以下命令安装ingranalyze：

$ pip3 install --user ingranalyze

在Linux上，可执行脚本可以在~/.local/bin中找到

而在MacOS上，脚本位于/Users/YOURUSERNAME/Library/Python/3.2/bin。

用法

典型用法如下：

$ ingranalyze.py --mics --repair 5 networkfile observationfile

要获取更多选项，您可以如下请求帮助：

$ ingranalyze.py -h
usage: ingranalyze.py [-h] [--mics] [--repair {1,2,3,4,5}] [--list_repairs] networkfile observationfile
positional arguments:
  networkfile           influence graph in bioquali format
  observationfile       observations in bioquali format

optional arguments:
  -h, --help            show this help message and exit
  --mics                compute minimal inconsistent cores
  --repair {1,2,3,4,5}  choose repair method: 1 flip observed variations, 2
                        flip influences, 3 define network nodes as inputs, 4
                        define network nodes as input in an experiment (use
                        only in case of multiple experiments), 5 add
                        influences. default is 3
  --list_repairs        compute all minimal repair sets

示例

酵母样本文件在此处可用：yeast_guelzim.net 和 yeast_snf2.obs