Project description

ddgen

Library of Python utilities that I needed so many times in the past

RefSeq transcripts have following categories:

If we have transcripts from multiple sources, we want to select the one coming from the source with highest priority.

E.g. NM_ has higher priority than XM_.

If we have multiple transcripts from a single source, we want to select the one with smaller integer.

E.g. NM_123.4 has higher priority than NM_124.4.

from ddgen.utils import txs

# tx will be `NM_123.4`
tx = txs.prioritize_refseq_transcripts(['NM_123.4', 'NM_124.4', 'XM_100.1'])

Algorithm	Hash digest
SHA256	`cbf1c9b25229f2df97660a9890f857ca9e23e1efdd1c1050cecd7b897e4ad481`
MD5	`f011fb40c9a03f32896734e75835adab`
BLAKE2b-256	`fbc2edce751299710010b0266dff2dd2e6a7455b798fce16fab35d095fedf437`

Algorithm	Hash digest
SHA256	`f3e8246a1a40888ac4ad657fba39138a2fc99640297d456046271ed22c3cf6d4`
MD5	`b3a5125ce3cb0bad24d2ca771e52c16f`
BLAKE2b-256	`a19ad8b561ca12e0fe8eae08ff93e6c7c15545c9161c71aadc7febc2f0c22b4c`