A wraper around the KEGG RESTful API
Project description
This package allows the enrichment of BEL networks with KEGG information by wrapping its RESTful API. Furthermore, it is integrated in the ComPath environment for pathway database comparison.
Installation
This code can be installed with pip3 install git+https://github.com/bio2bel/kegg.git
Functionalities and Commands
Following, the main functionalities and commands to work with this package:
Populate local database with KEGG info
python3 -m bio2bel_kegg populateRun an admin site for simple querying and exploration
python3 -m bio2bel_kegg web(http://localhost:5000/admin/)Export gene sets for programmatic use
python3 -m bio2bel_kegg export
Citation
Kanehisa, Furumichi, M., Tanabe, M., Sato, Y., and Morishima, K.; KEGG: new perspectives on genomes, pathways, diseases and drugs. Nucleic Acids Res. 45, D353-D361 (2017).
Kanehisa, M., Sato, Y., Kawashima, M., Furumichi, M., and Tanabe, M.; KEGG as a reference resource for gene and protein annotation. Nucleic Acids Res. 44, D457-D462 (2016).
Kanehisa, M. and Goto, S.; KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27-30 (2000).
