The Single Cell add-on for Orange3 adds functionality
for analysis of single cell data. The widgets enable gene filtering,
preprocessing, batch effect removal, gene and cell scoring and cluster analysis.
The widgets can be used seamlessly with other Orange widgets, including those
from Orange3-Bioinformatics
add-on.
Features
Explore the Diversity of Cells
load data from any platform and filter outlier cells
normalize expression values across samples and platforms
identify and explore sub-populations with a sample and across multiple samples
Discover New Marker Genes
identify signature genes for each subpopulation using multiple methods
use gene ontology enrichment to explore the biological meaning and identify cell types
Predict New Cell Types
build classifiers to identify the cell type of each subpopulation
use classifier on new data samples to predict cell types and focus on interesting cell type populations
