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Add-on for bioinformatics analysis of single cell data.

Project description

Orange3 Single Cell

PyPI Conda PyPI - License

The Single Cell add-on for Orange3 adds functionality for analysis of single cell data.

Installation

To install the add-on, run

pip install .

To register this add-on with Orange, but keep the code in the development directory (do not copy it to Python's site-packages directory), run

pip install -e .

Documentation / widget help can be built by running

make html htmlhelp

from the doc directory.

Usage

After the installation, the widget from this add-on is registered with Orange. To run Orange from the terminal, use

python -m Orange.canvas

The new widget appears in the toolbox bar under the section Single Cell.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page