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Helper package which implements HiCMatrix class for HiCExplorer and pyGenomeTracks

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Project description

This library implements the central class of HiCExplorer to manage Hi-C interaction matrices. It is separated from the main project to enable to use of Hi-C matrices in other project without the dependency to HiCExplorer. Moreover, it enables us to use the already separated pyGenomeTracks (former hicPlotTADs) to be used in HiCExplorer because mutual dependencies are resolved.

With version 8 we dropped the support for Python 2.

Read support

  • h5

  • cool

  • hicpro

  • homer

Write support

  • h5

  • cool

  • homer

  • ginteractions

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